Ten virtues of structured graphs

This paper extends the invited talk by the first author about the virtues of structured graphs. The motivation behind the talk and this paper relies on our experience on the development of ADR, a formal approach for the design of styleconformant, reconfigurable software systems. ADR is based on hierarchical graphs with interfaces and it has been conceived in the attempt of reconciling software architectures and process calculi by means of graphical methods. We have tried to write an ADR agnostic paper where we raise some drawbacks of flat, unstructured graphs for the design and analysis of software systems and we argue that hierarchical, structured graphs can alleviate such drawbacks

A coalgebraic semantics for causality in Petri nets

In this paper we revisit some pioneering efforts to equip Petri nets with compact operational models for expressing causality. The models we propose have a bisimilarity relation and a minimal representative for each equivalence class, and they can be fully explained as coalgebras on a presheaf category on an index category of partial orders. First, we provide a set-theoretic model in the form of a a causal case graph, that is a labeled transition system where states and transitions represent markings and firings of the net, respectively, and are equipped with causal information. Most importantly, each state has a poset representing causal dependencies among past events. Our first result shows the correspondence with behavior structure semantics as proposed by Trakhtenbrot and Rabinovich. Causal case graphs may be infinitely-branching and have infinitely many states, but we show how they can be refined to get an equivalent finitely-branching model. In it, states are equipped with symmetries, which are essential for the existence of a minimal, often finite-state, model. The next step is constructing a coalgebraic model. We exploit the fact that events can be represented as names, and event generation as name generation. Thus we can apply the Fiore-Turi framework: we model causal relations as a suitable category of posets with action labels, and generation of new events with causal dependencies as an endofunctor on this category. Then we define a well-behaved category of coalgebras. Our coalgebraic model is still infinite-state, but we exploit the equivalence between coalgebras over a class of presheaves and History Dependent automata to derive a compact representation, which is equivalent to our set-theoretical compact model. Remarkably, state reduction is automatically performed along the equivalence.Comment: Accepted by Journal of Logical and Algebraic Methods in Programmin

An interactive semantics of logic programming

We apply to logic programming some recently emerging ideas from the field of reduction-based communicating systems, with the aim of giving evidence of the hidden interactions and the coordination mechanisms that rule the operational machinery of such a programming paradigm. The semantic framework we have chosen for presenting our results is tile logic, which has the advantage of allowing a uniform treatment of goals and observations and of applying abstract categorical tools for proving the results. As main contributions, we mention the finitary presentation of abstract unification, and a concurrent and coordinated abstract semantics consistent with the most common semantics of logic programming. Moreover, the compositionality of the tile semantics is guaranteed by standard results, as it reduces to check that the tile systems associated to logic programs enjoy the tile decomposition property. An extension of the approach for handling constraint systems is also discussed.Comment: 42 pages, 24 figure, 3 tables, to appear in the CUP journal of Theory and Practice of Logic Programmin

Antiviral treatment of HBV positive pregnant women: an additional tool to reduce perinatal transmission

In a recent study published in New England Journal of Medicine, Pan and colleagues1 faced an important aspect for prevention of hepatitis B virus (HBV) infection: antiviral treatment with Tenofovir (TDF) during pregnancy to reduce perinatal transmission. This route of infection plays a crucial role for global diffusion of HBV, with frequency of chronic infection in mother-to-childtransmission (MTCT) of 90

An Algebra of Hierarchical Graphs and its Application to Structural Encoding

We define an algebraic theory of hierarchical graphs, whose axioms characterise graph isomorphism: two terms are equated exactly when they represent the same graph. Our algebra can be understood as a high-level language for describing graphs with a node-sharing, embedding structure, and it is then well suited for defining graphical representations of software models where nesting and linking are key aspects. In particular, we propose the use of our graph formalism as a convenient way to describe configurations in process calculi equipped with inherently hierarchical features such as sessions, locations, transactions, membranes or ambients. The graph syntax can be seen as an intermediate representation language, that facilitates the encodings of algebraic specifications, since it provides primitives for nesting, name restriction and parallel composition. In addition, proving soundness and correctness of an encoding (i.e. proving that structurally equivalent processes are mapped to isomorphic graphs) becomes easier as it can be done by induction over the graph syntax

Constraint Design Rewriting

We propose an algebraic approach to the design and transformation of constraint networks, inspired by Architectural Design Rewriting. The approach can be understood as (i) an extension of ADR with constraints, and (ii) an application of ADR to the design of reconfigurable constraint networks. The main idea is to consider classes of constraint networks as algebras whose operators are used to denote constraint networks with terms. Constraint network transformations such as constraint propagations are specified with rewrite rules exploiting the network’s structure provided by terms

Primitives for Contract-based Synchronization

We investigate how contracts can be used to regulate the interaction between processes. To do that, we study a variant of the concurrent constraints calculus presented in [1], featuring primitives for multi-party synchronization via contracts. We proceed in two directions. First, we exploit our primitives to model some contract-based interactions. Then, we discuss how several models for concurrency can be expressed through our primitives. In particular, we encode the pi-calculus and graph rewriting.Comment: In Proceedings ICE 2010, arXiv:1010.530

Architectural design rewriting as an architecture description language

Architectural Design Rewriting (ADR) is a declarative rule-based approach for the design of dynamic software architectures. The key features that make ADR a suitable and expressive framework are the algebraic presentation of graph-based structures and the use of conditional rewrite rules. These features enable the modelling of, e.g. hierarchical design, inductively defined reconfigurations and ordinary computation. Here, we promote ADR as an Architectural Description Language

Style-Based architectural reconfigurations

We introduce Architectural Design Rewriting (ADR), an approach to the design of reconfigurable software architectures whose key features are: (i) rule-based approach (over graphs); (ii) hierarchical design; (iii) algebraic presentation; and (iv) inductively-defined reconfigurations. Architectures are modelled by graphs whose edges and nodes represent components and connection ports. Architectures are designed hierarchically by a set of edge replacement rules that fix the architectural style. Depending on their reading, productions allow: (i) top-down design by refinement, (ii) bottom-up typing of actual architectures, and (iii) well-formed composition of architectures. The key idea is to encode style proofs as terms and to exploit such information at run-time for guiding reconfigurations. The main advantages of ADR are that: (i) instead of reasoning on flat architectures, ADR specifications provide a convenient hierarchical structure, by exploiting the architectural classes introduced by the style, (ii) complex reconfiguration schemes can be defined inductively, and (iii) style-preservation is guaranteed

CaSPiS: A Calculus of Sessions, Pipelines and Services

Service-oriented computing is calling for novel computational models and languages with well disciplined primitives for client-server interaction, structured orchestration and unexpected events handling. We present CaSPiS, a process calculus where the conceptual abstractions of sessioning and pipelining play a central role for modelling service-oriented systems. CaSPiS sessions are two-sided, uniquely named and can be nested. CaSPiS pipelines permit orchestrating the flow of data produced by different sessions. The calculus is also equipped with operators for handling (unexpected) termination of the partner’s side of a session. Several examples are presented to provide evidence of the flexibility of the chosen set of primitives. One key contribution is a fully abstract encoding of Misra et al.’s orchestration language Orc. Another main result shows that in CaSPiS it is possible to program a “graceful termination” of nested sessions, which guarantees that no session is forced to hang forever after the loss of its partner